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<title>Honors College Theses</title>
<copyright>Copyright (c) 2013 Wayne State University All rights reserved.</copyright>
<link>http://digitalcommons.wayne.edu/honorstheses</link>
<description>Recent documents in Honors College Theses</description>
<language>en-us</language>
<lastBuildDate>Thu, 09 May 2013 01:42:57 PDT</lastBuildDate>
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<title>Role of Ubiquitin E3 Ligase Breast Cancer Associated Gene 2 (BCA2) in SUMOylation</title>
<link>http://digitalcommons.wayne.edu/honorstheses/12</link>
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<pubDate>Tue, 07 May 2013 09:45:19 PDT</pubDate>
<description>
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	<p>As the occurrence of breast cancer increases around the world, the need for new therapeutic medicine becomes more vital to sustain the population. In order to accomplish this, specific mechanisms need to be understood to gain a perspective on the overall process of breast cancer development. One mechanism that is being researched is SUMOylation. The SUMOylation reaction uses small ubiquitin-like modifier (SUMO) proteins, which act as a type of post-translational modification that is necessary in order to preserve protein homeostasis and regulate cellular processes including apoptosis, cell proliferation, and response to stress. The SUMOs attach to a target protein through a SUMO E3 ligase and the modified protein then gains different cellular functions. An example of the SUMO-mediated protein degradation involves Arkadia, a SUMO-targeted ubiquitin ligase, which stimulates the degradation of the Ski protein, which is associated with tumor growth and development.</p>
<p>Breast Cancer Associated Gene 2 or BCA2 is identified as an E3 ligase in the ubiquitin proteasome system.  It has been found that BCA2 is co-expressed with the estrogen receptor (ER) in ER-positive breast cancer cells.  ER is crucial in the regulation of cell cycle progression and growth of breast cancer epithelial cells. Previous studies have shown that the BCA2 gene is regulated by the ER and BCA2 protein interacts with UBC9 and E2 ligase in the SUMOylation pathway. The regulation of BCA2 could prove critical since it could mediate the ubiquitination and possible SUMOylation of target proteins. While BCA2 as an Ubiquitin E3 ligase has been well established, its role in SUMOylation is unknown. The aim of this thesis is to identify BCA2’s involvement in SUMOylation. To achieve this, I performed bioinformatics analysis of the BCA2  protein sequence and found that out of the 6 lysines (Ks) in the sequence, K32 is the possible lysine important for SUMO attachment. I also tested the SUMOylation of BCA2 in an <em>in vitro</em> assay by using SUMO-specific proteins. The results have revealed an association between SUMO 2/3 and BCA2. Plasmids containing SUMO 1 and 2/3 were then purified from Top10 bacterial cultures and were transfected into HEK293 cells for immunoprecipitation experiments. Preliminary data from these experiments reveal a possible interaction of BCA2 with SUMO2/3. The involvement of BCA2 in both ubiquitination and SUMOylation pathways as an E3 ligase makes it a novel target for therapeutic intervention for the prevention and treatment of breast cancer patients.</p>

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<author>Fareea Khaliq</author>


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<title>Physical Activity and Exercise during Adolescence and Young Adulthood Can Act as Preventative Measures against the Development of Osteoporosis in Elderly People</title>
<link>http://digitalcommons.wayne.edu/honorstheses/11</link>
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<pubDate>Tue, 07 May 2013 09:45:18 PDT</pubDate>
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	<p>Osteoporosis, “the silent killer,” is responsible for 8.9 million annual fractures. Although not bound to these factors, osteoporosis typically targets females that are post-menopausal and have a family history of the disease. Osteoporosis is caused by a decrease in bone mass density. Physical activity and exercise and often spoken about when the topic of osteoporosis is discussed because of the impact they have on maintaining bone mass density in an effort to delay osteoporosis. This paper first provides an overview of osteoporosis, explanation of methods of diagnosing osteoporosis, risk factors, complications and treatment for osteoporosis. Topics covered include, bone mass density, dual-energy x-ray absorptiometry, Z-score & T-scores, kyphoplasty, the mechanostat theory, and weight-bearing activities. The focus of this paper is to look at the relationship between exercise and childhood within the interest of osteoporosis. Instead of looking at physical activity and exercise’s impact on the elderly, at look is taken at building bone mass density and strength during adolescence and young adulthood as a means of combating osteoporosis in elderly people. This paper was created as a Wayne State University HON 4998 requirement. As a female, Kinesiology Major, and Radiologic Technologist, the topic of osteoporosis seemed to be the perfect fit for research, and I found this topic of great interest.</p>

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<author>Christine C. Center</author>


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<title>The Effectiveness of Manipulatives in the Elementary School Classroom</title>
<link>http://digitalcommons.wayne.edu/honorstheses/10</link>
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<pubDate>Tue, 07 May 2013 09:45:17 PDT</pubDate>
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	<p>What are the best teaching strategies? How can educators help children learn most effectively? Are there strategies that can be used to teach children in meaningful and engaging ways while still keeping up with state standards? Questions like these have been raised by parents and educators for many years and are widely discussed and debated topics in the educational realm. The following paper attempts to answer these questions by investigating the effectiveness of elementary school classroom manipulatives. It outlines a research study that was conducted by Holly Berkseth, an undergraduate student from the College of Education at Wayne State University. This paper opens with a discussion of prior research and findings on the use of manipulatives in the elementary school classroom, and goes on to provide a thorough explanation of the design and findings of the research study that was conducted. The results of this study will benefit those affected by the practices and procedures in the elementary school setting and will provide useful information to current elementary school teachers in regards to the planning of their lessons and implementation of strategies. The results of this study aim to assist teachers in providing the most efficient and effective means of education to elementary school students.</p>

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<author>Holly A. Berkseth</author>


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<title>Promoting STEM Literacy in 21st Century Education</title>
<link>http://digitalcommons.wayne.edu/honorstheses/9</link>
<guid isPermaLink="true">http://digitalcommons.wayne.edu/honorstheses/9</guid>
<pubDate>Wed, 10 Apr 2013 09:40:20 PDT</pubDate>
<description>
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	<p>This research paper focuses on the importance of STEM (Science, Technology, Engineering, Mathematics) Literacy in American Education. Specifically, the research paper focuses on different strategies that can be used to incorporate literacy into the science and math classrooms. There are five different strategies presented for each content area and they were all suggested by a variety of Educational Journals. Along with literacy strategies, there is another part of the research paper that focuses on the importance of innovative experiences in the science and math classrooms that incorporate principles of engineering and technology. The importance of this is not only to promote critical thinking skills, but more so, to allow students to make connections with the content material and gain an interest in science and math related careers. To focus on the importance of engineering and technology in the science and math classrooms, research was conducted using Educational Journals and through interviewing two people who have knowledge on how to do this. Specifically, a retired engineer from General Motors was interviewed, He provided information on how General Motors promotes STEM literacy and his thoughts and knowledge on the topic. Along with this professional, a technology teacher from a Detroit Metropolitan middle school was interviewed. He talked about how he uses innovative projects that allow students to think critically and be engaged, while simultaneously using science and math skills. The main purpose of this paper is to provide future educators with not only ideas, but more so, the importance of STEM literacy in science and math classrooms and how it will have an impact on their students in the future.</p>

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<author>Emily V. Martin</author>


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<title>Association of genetic variation, gene expression, and protein abundance within the natriuretic peptide pathway</title>
<link>http://digitalcommons.wayne.edu/honorstheses/8</link>
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<pubDate>Wed, 10 Apr 2013 09:40:19 PDT</pubDate>
<description>
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	<p><strong>Background:</strong> The natriuretic peptide (NP) system is a critical physiologic pathway in heart failure, but there is marked individual variability in its functioning which may be genetic in origin.  We investigated how genetic variations in NP pathway genes correlate with gene expression and protein abundance.</p>
<p><strong> </strong></p>
<p><strong>Methods: </strong>DNA, RNA, and tissue from human kidney (n=77) were obtained. Kidney was chosen as target tissue because each of the four candidate genes and proteins (natriuretic peptide receptor 1 (NPR1), NPR2, NPR3 and membrane metallo-endopeptidase (MME)) are expressed there. DNA samples were genotyped for 120 single nucleotide polymorphisms (SNP) in these four genes using a custom Illumina array. mRNA levels were quantified using real-time reverse transcriptase polymerase chain reaction.  Protein concentration was determined in tissue lysates using commercially available assays for each target. The association of SNPs with RNA and protein quantity was tested with ANOVA adjusted for gender and race.  A principal components (PC) based method was also used to test the association of overall gene variation with RNA and protein quantity. Findings with false discovery rate (FDR) <0.05 were considered significant.</p>
<p><strong> </strong></p>
<p><strong>Results: </strong>Eleven SNPs in <em>NPR2</em> were significantly associated with protein expression after controlling for FDR at 0.05, but none of these were associated with RNA quantity.  Several genotypes in<em> MME </em>and<em> NPR3 </em>showed crude associations (unadjusted p<0.05) for protein and RNA quantity, but not after controlling for FDR. There were no SNPs associated with RNA or protein expression in <em>NPR1</em>.  RNA and Protein quantity poorly correlated with each other; NPR1 and MME showed weak but significant positive correlations (p = 0.04 and 0.03, respectively). The PC analysis yielded similar overall results, with PC1 of <em>NPR2</em> (accounting for 71% of variability) being the only significant association with protein (p=0.04), and no associations for RNA.</p>
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<p><strong>Conclusions: </strong>Genetic variation <em>NPR2</em> is associated with altered protein expression, but this is not explained via gene expression.  There were crude associations for <em>MME</em> and <em>NPR3</em> variants but these did not reach adjusted significance in this small study.  Additional studies are needed to assess the clinical impact, if any, of <em>NPR2</em> genetic variation.</p>

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<author>Bipin Sunkara</author>


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<title>Prenatal Genetic Diagnosis Using Transcervically Derived and Immunomagnetically Isolated Trophoblast Cells</title>
<link>http://digitalcommons.wayne.edu/honorstheses/7</link>
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<pubDate>Wed, 10 Apr 2013 09:40:15 PDT</pubDate>
<description>
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	<p>Trophoblast cells migrate from the placenta into the endocervical canal early in the first trimester and can be collected non-invasively by transcervical sampling (TCS), potentially providing fetal DNA for prenatal genetic diagnosis.  Experiments were conducted to separate fetal cells from maternal cells within the TCS specimens and use the fetal cells to perform genetic analysis.  Trophoblast cells were efficiently isolated from TCS specimens during weeks 5-18 of gestation using HLA-G antibody coupled to magnetic nanoparticles.  Immunofluorescence microscopy revealed that 99% of isolated cells expressed the chorionic gonadotropin β subunit (β-CG), while the non-bound cell fraction expressed none.  Immunomagnetically isolated cells from 20 patient specimens were used to determine fetal gender in single cell assays, amplifying sequences in genes on the X (<em>DMD</em>) and Y (<em>SRY</em>) chromosomes by multiplex polymerase chain reaction (PCR).  Of 270 total cells, PCR products were detected in 256 cells and identified gender (11 male; 9 female) without error.  PCR-based genetic testing is highly reliable as early as week 5 of gestation after immunomagnetic isolation of extravillous trophoblast cells obtained by TCS.</p>

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<author>Swati Bajpayee</author>


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<title>The Role of MicroRNAs in Breast Cancer Migration, Invasion and Metastasis</title>
<link>http://digitalcommons.wayne.edu/honorstheses/6</link>
<guid isPermaLink="true">http://digitalcommons.wayne.edu/honorstheses/6</guid>
<pubDate>Wed, 10 Apr 2013 09:40:14 PDT</pubDate>
<description>
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	<p>MicroRNAs (miRNAs) are a major class of small, noncoding RNA molecules that regulate gene expression by targeting mRNAs to trigger either translational repression or mRNA degradation. They have recently been more widely investigated due to their potential role as targets for cancer therapy. Many miRNAs have been implicated in several human cancers, including breast cancer. miRNAs are known to regulate cell cycle and development, and thus may serve as useful targets for exploration in anticancer therapeutics. The link between altered miRNA signatures and breast cancer development and metastasis can be observed either through the loss of tumor suppressor miRNAs, such as let-7s, miR-30a/31/34a/125s/200s/203/205/206/342 or the overexpression of oncogenic miRNAs, such as miR-10b/21/135a/155/221/222/224/373/520c in breast cancer cells. Some of these miRNAs have also been validated in tumor specimens of breast cancer patients, underscoring their potential roles in diagnostics, as well as targets for novel therapeutics for breast cancer. In this review article, we will provide an overview and update of our current understanding of the mode of action of several of these well characterized miRNAs in breast cancer models. Therefore, better understanding of the gene networks orchestrated by these miRNAs may help exploit the full potential of miRNAs in regards to cancer diagnosis, treatment, and therapeutics.</p>

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<author>Joy Tang et al.</author>


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<title>The Road To Gaining Acceptance And Status For Women In American Medicine</title>
<link>http://digitalcommons.wayne.edu/honorstheses/5</link>
<guid isPermaLink="true">http://digitalcommons.wayne.edu/honorstheses/5</guid>
<pubDate>Mon, 16 Jul 2012 12:33:02 PDT</pubDate>
<description>
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	<p>For my honors thesis, I discuss the history of women in American medicine during the late nineteenth and early twentieth centuries. In particular, I focus on how the social and cultural time periods affected women’s efforts in pursuing further medical education, how these women were perceived and treated by not only their male colleagues, but also the outside world, how it affected their future career choices in medicine, and finally, how their efforts ended up changing the medical career path for future female generations.</p>
<p>It begins with a discussion of the variety of obstacles, both private and public, that hindered women from entering the medical field. For some women, it was the responsibilities at home that left them little time and energy to pursue higher education. For others, it was simply a lack of access to the right opportunities and resources required to apply to medical school. During this time period, many medical schools and associations prohibited the acceptance of women. Certain homeopathic and sectarian schools were more accepting of women, although numbers were still limited.</p>
<p>It continues with a discussion of what the medical education, academic and social life, and opportunity were like for the women who did enter medical school. Here, I examine specific case studies of women who were students at this time. I include these women’s background information, their stories during medical school, as well as their career choices after graduation. I also discuss how the achievements of these women helped to gain increasing acceptance of women into medical school.</p>
<p>Finally, I conclude with a discuss of how these accomplishments helped shape the future of medical education and practice for women, as well as how and why women in medicine are still facing some of these challenges in their careers today.</p>

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<author>Terrie S. Ahn</author>


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<title>Increased Modulation by Cognitive Control Region during fMRI Working Memory Task Suggest Inefficiencies in Network Connectivity in Children with ADHD</title>
<link>http://digitalcommons.wayne.edu/honorstheses/4</link>
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<pubDate>Mon, 16 Jul 2012 12:32:57 PDT</pubDate>
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	<p>Attention Deficit / Hyperactivity Disorder is a neurodevelopmental disorder common among children and adolescent populations whose symptoms are believed to be caused by deficits in executive functioning processes such as working memory. Using fMRI analyses, differences in the modulatory influence exhibited by the dorsal anterior cingulate cortex (dACC) on cortico-striatal regions implicated in working memory (2-back) (Owen et al 2005) was assessed between children with ADHD (twenty-three participants; mean age 6 yrs: 6.4-14.9 yrs) and healthy controls (twenty-six participants; mean age 10.1yrs: 6.3-14.1 yrs). Modulatory influence is defined as the degree to which one region exerts control on another region and was investigated using the analysis tool Psychophysiological Interactions (PPI) (Friston et al. 1997). Results of second level analyses show an increased level of dACC modulation on target regions (parietal lobe, middle frontal gyrus, dorsal pre frontal cortex) in children with ADHD and suggest an underlying inefficiency in control network circuitry. Further investigation into network efficiency was conducted using performance (d’) and latency response data. Statistical analyses of performance and latency response times show similar averages between groups and indicate children with ADHD were not compromised in their ability to complete the 2-Back task. This suggests the differential pattern of dACC modulation observed in children with ADHD is not driven by behavioral symptoms of the psychiatric disorder and allude to functional differences in network circuitry driving the apparent inefficiency. Our inefficiency hypothesis is consistent with other fMRI studies investigating working memory in subjects with ADHD. Future analyses using longitudinal studies of subjects may highlight potential developmental implications on the modulatory behavior of the dACC in children with ADHD.</p>

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<author>Ashley Burgess</author>


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<title>Voicing and Devoicing Rules in East and Southeast Asian Languages</title>
<link>http://digitalcommons.wayne.edu/honorstheses/3</link>
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<pubDate>Thu, 10 May 2012 07:11:34 PDT</pubDate>
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	<p>Languages are composed of sounds that are produced by the vocal organs. These sounds can be split into two categories, voiceless and voiced. In general, based upon the International Phonetic Alphabet, there are more voiced sounds possible than voiceless sounds, with vowels, nasals, and approximants inherently voiced. After analyzing the separate phonetic inventories of 9 Asian languages representative of the major Asian language families (Arabic, Burmese, Japanese, Korean, Malay, Mandarin Chinese, Tamil, Turkish, Vietnamese), it was found that all of them except Mandarin Chinese had far more voiced sounds than voiceless sounds as well. After isolating only stops and affricates, all the Asian languages were found to have more voiceless phonemes than voiced. In regards to voicing and devoicing rules, the data shows that there are more devoicing rules than voicing rules, which might be explained by the fact that most languages have more voiced phonemes, so naturally in order for a change in voicing to occur, it would be more likely for the larger number of voiced sounds to become devoiced, simply by probability. In addition, since languages possess more voiced than voiceless sounds, it would make sense to have more devoicing rules in order to create a voiced and voiceless alternation in order to avoid misinterpretation of sounds. These conclusions may not be valid because the sample size of the data is too small and a more thorough analysis of voicing and devoicing rules in Asian languages would need to be conducted.</p>

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<author>Siyu C. Zhang</author>


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<title>BER and Folate Deficiency: A comprehensive overview of DNA base excision repair and the effect of dietary folate</title>
<link>http://digitalcommons.wayne.edu/honorstheses/2</link>
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<pubDate>Thu, 10 May 2012 07:11:33 PDT</pubDate>
<description>
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	<p>Folate is the naturally occurring form of water-soluble B vitamin that is found in foods such as leafy vegetables, fruits, legumes, etc. Dietary supplementation of folate has shown to be protective against neural tube defects and other congenital disorders, and of recent, its role in carcinogenesis has been of special interest. Though mechanistically unclear, a positive correlation has been observed between folate deficiency in the diet and decrease function of DNA base excision repair pathways. DNA base excision repair, commonly referred to as BER, is an important cellular process that is responsible for the removal and repair of individual damaged nitrogenous bases, effectively restoring proper DNA sequence and stability. Folate is believed to be somehow involved in the mechanisms by which BER enzymes function. It has been shown in animal model studies that by decreasing folate in the diet, the cell’s capability for BER is also decreased. Interestingly, more recent studies have indicated that under specific conditions folate deficiency may be associated with an up-regulation of apoptotic activity, suggesting a potential for therapeutic application of folate deficient diets. Further research is still needed, especially in the determining the specific mechanism by which folate affects BER and the enzymes associated with this pathway.</p>

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<author>Lydia Lanni</author>


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<title>Seeds for Change: Examining the Association between Race, Food Security, and Urban Agriculture</title>
<link>http://digitalcommons.wayne.edu/honorstheses/1</link>
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<pubDate>Thu, 10 May 2012 07:10:27 PDT</pubDate>
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	<p>Access to healthy, nutritious food is one of the most basic human needs. Unfortunately, a large portion of the global population, including that of the United States, has limited access to such food, hence putting families in a state of food insecurity. Food insecurity occurs when households are unable to (or struggle to) provide adequate food to all household members due to lack of funds or food resources. This phenomenon is considered to be a major concern in many urban settings such as Detroit, as it is a characteristic of societal distress. Interestingly, research has shown that while food insecurity is widespread, it has greater prevalence amongst minority groups who report higher rates of food insecurity when compared to their white suburban counterparts (“Food security in the United States”, 2011).This leads one to ask, what is the connection between food security and race? Analyzing this issue reveals a structural conflict within society which works to the advantage of some racial groups at the expense of others. While urban minorities experience food insecurity, a shift towards urban agriculture is underway that aims to ameliorate structural inequality in the food system. This study investigates the links between race and food security as well as the urban agricultural movement as a response to an inadequate food system, especially that which exists in Detroit.</p>

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<author>Komal Razvi</author>


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